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mini-css-extract-plugin","// extracted by mini-css-extract-plugin","import 'bootstrap';\r\nimport 'bootstrap-select';\r\n\r\nimport 'leaflet';\r\nimport 'leaflet-svg-shape-markers/dist/leaflet-svg-shape-markers.min.js';\r\nimport 'leaflet.markercluster/dist/leaflet.markercluster.js';\r\n\r\nimport 'jstree';\r\n\r\n\r\nimport 'datatables.net';\r\nimport 'datatables.net-bs4';\r\nimport 'datatables.net-rowgroup';\r\nimport 'datatables.net-rowgroup-bs4';\r\nimport 'datatables.net-fixedcolumns';\r\nimport 'datatables.net-fixedcolumns-bs4';\r\nimport 'datatables.net-buttons';\r\nimport 'datatables.net-buttons/js/buttons.html5';\r\nimport 'datatables.net-buttons-bs4';\r\nimport 'datatables.net-scroller';\r\n\r\n\r\n\r\n\r\n// SCRIPTS\r\nimport './scripts/font-awesome';\r\nimport './components/carousel/carousel';\r\nimport './components/scroll-to-top/scroll-to-top';\r\n\r\nimport { DocumentTreeLoader } from './components/document-tree/document-tree-loader'; export { DocumentTreeLoader };\r\n\r\n\r\n\r\n\r\n\r\n// STYLES\r\nimport 'bootstrap/dist/css/bootstrap.min.css';\r\nimport 'bootstrap-select/dist/css/bootstrap-select.min.css';\r\n\r\nimport 'et-line/style.css';\r\nimport 'leaflet/dist/leaflet.css';\r\nimport 'leaflet.markercluster/dist/MarkerCluster.css';\r\nimport 'leaflet.markercluster/dist/MarkerCluster.Default.css';\r\nimport 'jstree/dist/themes/default/style.min.css';\r\nimport 'datatables.net-bs4/css/dataTables.bootstrap4.min.css';\r\nimport 'datatables.net-rowgroup-bs4/css/rowGroup.bootstrap4.min.css';\r\nimport 'datatables.net-buttons-bs4/css/buttons.bootstrap4.min.css';\r\nimport 'datatables.net-scroller-bs4/css/scroller.bootstrap4.min.css';\r\nimport 'datatables.net-fixedcolumns-bs4/css/fixedColumns.bootstrap4.min.css';\r\n\r\n\r\nimport './styles/_base.scss';\r\nimport './styles/variables.scss';\r\nimport './styles/shared.scss';\r\n\r\nimport './styles/elements/nav-bar.scss';\r\nimport './styles/elements/footer.scss';\r\nimport './styles/elements/headings.scss';\r\nimport './styles/elements/button.scss';\r\nimport './styles/elements/data-table.scss';\r\n\r\nimport './styles/mixins/layout.scss';\r\n\r\nimport './components/carousel/carousel.scss';\r\nimport './components/scroll-to-top/scroll-to-top.scss';\r\nimport './components/document-tree/document-tree.scss';\r\n\r\n\r\n\r\n\r\n// AUTH MODULE -- imported here to avoid having a separate auth.* bundle\r\n//import { UserManagementPage } from '../auth/pages/management/scripts/management.page';\r\n//export { UserManagementPage }; //to make discoverable as lib export\r\n\r\nimport { ExpertisePage } from '../auth/pages/profile/scripts/expertise.page'; export { ExpertisePage };\r\n\r\nimport '../auth/components/user-header/user-header.scss';\r\nimport '../auth/pages/auth.scss';\r\nimport '../auth/pages/profile/profile.scss';\r\n//import '../auth/pages/management/management.scss';\r\n\r\n","\r\n\r\n$(window).on('scroll', function () {\r\n    if ($(this).scrollTop() > 200) {\r\n        //$(\".scroll-to-top\").fadeIn(400);\r\n        $(\".scroll-to-top\").addClass(\"show\");\r\n\r\n    } else {\r\n        //$(\".scroll-to-top\").fadeOut(400);\r\n        $(\".scroll-to-top\").removeClass(\"show\");\r\n    }\r\n});\r\n\r\n$(\".scroll-to-top\").on('click', function (event) {\r\n    event.preventDefault();\r\n    $(\"html, body\").animate({\r\n        scrollTop: 0\r\n    }, 600);\r\n});","\r\n\r\nexport class UserExperienceEntry {\r\n    Email: string;\r\n    ExperienceJson: string;\r\n    constructor() { }\r\n}\r\n\r\nexport class UserExperience {\r\n\r\n    TrainingDegrees: string[];\r\n    TrainingDegreesOther: string;\r\n    TrainingExperience: string[];\r\n    TrainingExperienceOther: string;\r\n    PathogenFamilies: string[];\r\n    PathogenFamiliesOther: string;\r\n    OtherPathogens: string[];\r\n    OtherPathogensOther: string;\r\n    StudyTypes: string[];\r\n    DataScience: string[];\r\n    AssayDevelopment: string[];\r\n    AssayDevelopmentOther: string;\r\n    ContainmentLab: string[];\r\n    UsRegulations: string[];\r\n    MinionAnalysis: string[];\r\n    RawShortReadAnalysis: string[];\r\n    StatisticalSequenceAnalysis: string[];\r\n    OtherExpertise: string;\r\n\r\n    constructor() {}\r\n\r\n    initialize(): void {\r\n\r\n        $(\"#expertise-form :input\").each((index, element) => {\r\n            let input: any = $(element);\r\n            let inputId: string = input.attr(\"id\");\r\n            //console.log(input.attr(\"id\"), input.is(\":checked\"));\r\n\r\n            if (inputId && inputId.startsWith(\"text\") && input.val() != \"\") {\r\n                if (inputId == \"textDegreeOther\") { this.TrainingDegreesOther = input.val(); }\r\n                else if (inputId == \"textExperienceOther\") { this.TrainingExperienceOther = input.val(); }\r\n                else if (inputId == \"textPathogenOther\") { this.PathogenFamiliesOther = input.val(); }\r\n                else if (inputId == \"textOtherPathogenOther\") { this.OtherPathogensOther = input.val(); }\r\n                else if (inputId == \"textAssayDevelopmentOther\") { this.AssayDevelopmentOther = input.val(); }\r\n                else if (inputId == \"textOtherExpertise\") { this.OtherExpertise = input.val(); }\r\n            }\r\n            else if (input.is(\":checked\")) {\r\n\r\n                if (inputId.startsWith(\"degree\")) {\r\n                    if (!this.TrainingDegrees) this.TrainingDegrees = [];\r\n                    this.TrainingDegrees.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"experience\")) {\r\n                    if (!this.TrainingExperience) this.TrainingExperience = [];\r\n                    this.TrainingExperience.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"pathogen\")) {\r\n                    if (!this.PathogenFamilies) this.PathogenFamilies = [];\r\n                    this.PathogenFamilies.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"otherpathogen\")) {\r\n                    if (!this.OtherPathogens) this.OtherPathogens = [];\r\n                    this.OtherPathogens.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"studytype\")) {\r\n                    if (!this.StudyTypes) this.StudyTypes = [];\r\n                    this.StudyTypes.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"datascience\")) {\r\n                    if (!this.DataScience) this.DataScience = [];\r\n                    this.DataScience.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"assaydev\")) {\r\n                    if (!this.AssayDevelopment) this.AssayDevelopment = [];\r\n                    this.AssayDevelopment.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"contain\")) {\r\n                    if (!this.ContainmentLab) this.ContainmentLab = [];\r\n                    this.ContainmentLab.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"regulation\")) {\r\n                    if (!this.UsRegulations) this.UsRegulations = [];\r\n                    this.UsRegulations.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"minion\")) {\r\n                    if (!this.MinionAnalysis) this.MinionAnalysis = [];\r\n                    this.MinionAnalysis.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"rawshort\")) {\r\n                    if (!this.RawShortReadAnalysis) this.RawShortReadAnalysis = [];\r\n                    this.RawShortReadAnalysis.push(inputId);\r\n                }\r\n                else if (inputId.startsWith(\"statsequence\")) {\r\n                    if (!this.StatisticalSequenceAnalysis) this.StatisticalSequenceAnalysis = [];\r\n                    this.StatisticalSequenceAnalysis.push(inputId);\r\n                }\r\n\r\n                //console.log(input.attr(\"id\"));\r\n            }\r\n        });\r\n    }\r\n\r\n    setupUI(): void {\r\n\r\n        let textfields: string[] = [ \"TrainingDegreesOther\", \"TrainingExperienceOther\", \"PathogenFamiliesOther\", \"OtherPathogensOther\", \"AssayDevelopmentOther\", \"OtherExpertise\" ];\r\n        let switches: string[] = [\"TrainingDegrees\", \"TrainingExperience\", \"PathogenFamilies\", \"OtherPathogens\", \"StudyTypes\", \"DataScience\", \"AssayDevelopment\", \"ContainmentLab\", \"UsRegulations\", \"MinionAnalysis\", \"RawShortReadAnalysis\",\"StatisticalSequenceAnalysis\" ];\r\n\r\n        textfields.forEach((field: string) => {\r\n            if (this[field] != undefined) {\r\n                if (field == \"TrainingDegreesOther\") { $(\"#textDegreeOther\").val(this[field]); }\r\n                else if (field == \"TrainingExperienceOther\") { $(\"#textExperienceOther\").val(this[field]); }\r\n                else if (field == \"PathogenFamiliesOther\") { $(\"#textPathogenOther\").val(this[field]); }\r\n                else if (field == \"OtherPathogensOther\") { $(\"#textOtherPathogenOther\").val(this[field]); }\r\n                else if (field == \"AssayDevelopmentOther\") { $(\"#textAssayDevelopmentOther\").val(this[field]); }\r\n                else if (field == \"OtherExpertise\") { $(\"#textOtherExpertise\").val(this[field]); }\r\n            }\r\n        });\r\n\r\n        switches.forEach((field: string) => {\r\n            if (this[field] != undefined) {\r\n                this[field].forEach((switchId: string) => {\r\n                    $(\"#\" + switchId).prop(\"checked\", true);\r\n                });\r\n            }\r\n        });\r\n    }\r\n\r\n    getTrainingDegreeString(): string {\r\n        let output: string = \"\";\r\n        if (this.TrainingDegrees == undefined && this.TrainingDegreesOther == undefined) return \"\";\r\n        if (this.TrainingDegrees != undefined) {\r\n            if (this.TrainingDegrees.includes(\"degree1\")) output = this.addValue(output, \"Bioinformatics Professional\");\r\n            if (this.TrainingDegrees.includes(\"degree2\")) output = this.addValue(output, \"Biosafety/Biosecurity Professional\");\r\n            if (this.TrainingDegrees.includes(\"degree3\")) output = this.addValue(output, \"Structural Biologist\");\r\n            if (this.TrainingDegrees.includes(\"degree4\")) output = this.addValue(output, \"Data Scientist/Computational Biologist\");\r\n            if (this.TrainingDegrees.includes(\"degree5\")) output = this.addValue(output, \"Ecologist\");\r\n            if (this.TrainingDegrees.includes(\"degree6\")) output = this.addValue(output, \"Entomologist\");\r\n            if (this.TrainingDegrees.includes(\"degree7\")) output = this.addValue(output, \"Epidemiologist\");\r\n            if (this.TrainingDegrees.includes(\"degree8\")) output = this.addValue(output, \"Geneticist\");\r\n            if (this.TrainingDegrees.includes(\"degree9\")) output = this.addValue(output, \"Immunologist\");\r\n            if (this.TrainingDegrees.includes(\"degree10\")) output = this.addValue(output, \"Legal/Agreements/Intellectual Property Professional\");\r\n            if (this.TrainingDegrees.includes(\"degree11\")) output = this.addValue(output, \"Medical Doctor\");\r\n            if (this.TrainingDegrees.includes(\"degree12\")) output = this.addValue(output, \"Microbiologist\");\r\n            if (this.TrainingDegrees.includes(\"degree13\")) output = this.addValue(output, \"Nurse\");\r\n            if (this.TrainingDegrees.includes(\"degree14\")) output = this.addValue(output, \"Public Health Professional\");\r\n            if (this.TrainingDegrees.includes(\"degree15\")) output = this.addValue(output, \"Statistical Geneticist\");\r\n            if (this.TrainingDegrees.includes(\"degree16\")) output = this.addValue(output, \"Statistician\");\r\n            if (this.TrainingDegrees.includes(\"degree17\")) output = this.addValue(output, \"Veterinarian\");\r\n            if (this.TrainingDegrees.includes(\"degree18\")) output = this.addValue(output, \"Virologist\");\r\n        }\r\n        if (this.TrainingDegreesOther != undefined && this.TrainingDegreesOther.length > 0) output = this.addValue(output, this.TrainingDegreesOther);\r\n        return output;\r\n    }\r\n\r\n    getTrainingExperienceString(): string {\r\n        let output: string = \"\";\r\n        if (this.TrainingExperience == undefined && this.TrainingExperienceOther == undefined) return \"\";\r\n        if (this.TrainingExperience != undefined) {\r\n            if (this.TrainingExperience.includes(\"experience1\")) output = this.addValue(output, \"Administrator or Project Director\");\r\n            if (this.TrainingExperience.includes(\"experience2\")) output = this.addValue(output, \"Data Manager\");\r\n            if (this.TrainingExperience.includes(\"experience3\")) output = this.addValue(output, \"Project/Program Manager\");\r\n            if (this.TrainingExperience.includes(\"experience4\")) output = this.addValue(output, \"Quality Assurance/Control Professional\");\r\n            if (this.TrainingExperience.includes(\"experience5\")) output = this.addValue(output, \"Technician\");\r\n        }\r\n        if (this.TrainingExperienceOther != undefined && this.TrainingExperienceOther.length > 0) output = this.addValue(output, this.TrainingExperienceOther);\r\n        return output;\r\n    }\r\n\r\n    getPathogenFamilyString(): string {\r\n        let output: string = \"\";\r\n        if (this.PathogenFamilies == undefined && this.PathogenFamiliesOther == undefined) return \"\";\r\n        if (this.PathogenFamilies != undefined) {\r\n            if (this.PathogenFamilies.includes(\"pathogen1\")) output = this.addValue(output, \"<i>Asfarviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen2\")) output = this.addValue(output, \"<i>Astroviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen3\")) output = this.addValue(output, \"<i>Birnaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen4\")) output = this.addValue(output, \"<i>Bunyaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen5\")) output = this.addValue(output, \"<i>Caliciviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen6\")) output = this.addValue(output, \"<i>Coronaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen7\")) output = this.addValue(output, \"<i>Filoviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen8\")) output = this.addValue(output, \"<i>Flaviviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen9\")) output = this.addValue(output, \"<i>Herpesviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen10\")) output = this.addValue(output, \"<i>Matonaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen11\")) output = this.addValue(output, \"<i>Orthomyxoviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen12\")) output = this.addValue(output, \"<i>Papillomaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen13\")) output = this.addValue(output, \"<i>Picornaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen14\")) output = this.addValue(output, \"<i>Paramyxoviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen15\")) output = this.addValue(output, \"<i>Peribunyaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen16\")) output = this.addValue(output, \"<i>Pneumoviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen17\")) output = this.addValue(output, \"<i>Poxviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen18\")) output = this.addValue(output, \"<i>Polyomaviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen19\")) output = this.addValue(output, \"<i>Reoviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen20\")) output = this.addValue(output, \"<i>Retroviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen21\")) output = this.addValue(output, \"<i>Rhabdoviridae</i>\");\r\n            if (this.PathogenFamilies.includes(\"pathogen22\")) output = this.addValue(output, \"<i>Togaviridae</i>\");\r\n        }\r\n        if (this.PathogenFamiliesOther != undefined && this.PathogenFamiliesOther.length > 0) output = this.addValue(output, this.PathogenFamiliesOther);\r\n        return output;\r\n    }\r\n\r\n    getOtherPathogensString(): string {\r\n        let output: string = \"\";\r\n        if (this.OtherPathogens == undefined && this.OtherPathogensOther == undefined) return \"\";\r\n        if (this.OtherPathogens != undefined) {\r\n            if (this.OtherPathogens.includes(\"otherpathogen1\")) output = this.addValue(output, \"Bacteria\");\r\n            if (this.OtherPathogens.includes(\"otherpathogen2\")) output = this.addValue(output, \"Fungi\");\r\n            if (this.OtherPathogens.includes(\"otherpathogen3\")) output = this.addValue(output, \"Parasites\");\r\n            if (this.OtherPathogens.includes(\"otherpathogen4\")) output = this.addValue(output, \"Protozoa\");\r\n        }\r\n        if (this.OtherPathogensOther != undefined && this.OtherPathogensOther.length > 0) output = this.addValue(output, this.OtherPathogensOther);\r\n        return output;\r\n    }\r\n\r\n    getStudyTypesString(): string {\r\n        let output: string = \"\";\r\n        if (this.StudyTypes == undefined) return \"\";\r\n        if (this.StudyTypes.includes(\"studytype1\")) output = this.addValue(output, \"Aquatic animals\");\r\n        if (this.StudyTypes.includes(\"studytype2\")) output = this.addValue(output, \"Humans (behavioral studies)\");\r\n        if (this.StudyTypes.includes(\"studytype3\")) output = this.addValue(output, \"Humans (clinical trials)\");\r\n        if (this.StudyTypes.includes(\"studytype4\")) output = this.addValue(output, \"Humans (serosurveys)\");\r\n        if (this.StudyTypes.includes(\"studytype5\")) output = this.addValue(output, \"Insects\");\r\n        if (this.StudyTypes.includes(\"studytype6\")) output = this.addValue(output, \"Livestock\");\r\n        if (this.StudyTypes.includes(\"studytype7\")) output = this.addValue(output, \"Wildlife\");\r\n        return output;\r\n    }\r\n\r\n    getDataScienceString(): string {\r\n        let output: string = \"\";\r\n        if (this.DataScience == undefined) return \"\";\r\n        if (this.DataScience.includes(\"datascience1\")) output = this.addValue(output, \"Bioinformatics\");\r\n        if (this.DataScience.includes(\"datascience2\")) output = this.addValue(output, \"Biostatistics\");\r\n        if (this.DataScience.includes(\"datascience3\")) output = this.addValue(output, \"Epidemiological analysis\");\r\n        if (this.DataScience.includes(\"datascience4\")) output = this.addValue(output, \"Geospatial analyses\");\r\n        if (this.DataScience.includes(\"datascience5\")) output = this.addValue(output, \"Genomic/Sequence analysis\");\r\n        return output;\r\n    }\r\n\r\n    getAssayDevelopmentString(): string {\r\n        let output: string = \"\";\r\n        if (this.AssayDevelopment == undefined && this.AssayDevelopmentOther == undefined) return \"\";\r\n        if (this.AssayDevelopment != undefined) {\r\n            if (this.AssayDevelopment.includes(\"assaydev1\")) output = this.addValue(output, \"Antigen assay development and/or validation\");\r\n            if (this.AssayDevelopment.includes(\"assaydev2\")) output = this.addValue(output, \"Molecular assay development and/or validation\");\r\n            if (this.AssayDevelopment.includes(\"assaydev3\")) output = this.addValue(output, \"Serology assay development and/or validation\");\r\n        }\r\n        if (this.AssayDevelopmentOther != undefined && this.AssayDevelopmentOther.length > 0) output = this.addValue(output, this.AssayDevelopmentOther);\r\n        return output;\r\n    }\r\n\r\n    getContainmentLabString(): string {\r\n        let output: string = \"\";\r\n        if (this.ContainmentLab == undefined) return \"\";\r\n        if (this.ContainmentLab.includes(\"contain1\")) output = this.addValue(output, \"BSL-2\");\r\n        if (this.ContainmentLab.includes(\"contain2\")) output = this.addValue(output, \"BSL-3\");\r\n        if (this.ContainmentLab.includes(\"contain3\")) output = this.addValue(output, \"BSL-4\");\r\n        return output;\r\n    }\r\n\r\n    getUsRegulationsString(): string {\r\n        let output: string = \"\";\r\n        if (this.UsRegulations == undefined) return \"\";\r\n        if (this.UsRegulations.includes(\"regulation1\")) output = this.addValue(output, \"Select agent\");\r\n        if (this.UsRegulations.includes(\"regulation2\")) output = this.addValue(output, \"Dual Use Research of Concern (DURC)\");\r\n        if (this.UsRegulations.includes(\"regulation3\")) output = this.addValue(output, \"HHS P3CO Framework (potential pandemic pathogens)\");\r\n        return output;\r\n    }\r\n\r\n    getMinionAnalysisString(): string {\r\n        let output: string = \"\";\r\n        if (this.MinionAnalysis == undefined) return \"\";\r\n        if (this.MinionAnalysis.includes(\"minion1\")) output = this.addValue(output, \"Basics of minION QC\");\r\n        if (this.MinionAnalysis.includes(\"minion2\")) output = this.addValue(output, \"Using CLC Genomics Workbench\");\r\n        if (this.MinionAnalysis.includes(\"minion3\")) output = this.addValue(output, \"Using NANOPACK\");\r\n        return output;\r\n    }\r\n\r\n    getRawShortReadAnalysisString(): string {\r\n        let output: string = \"\";\r\n        if (this.RawShortReadAnalysis == undefined) return \"\";\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort1\")) output = this.addValue(output, \"Demultiplexing, quality, and basics of short read QC\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort2\")) output = this.addValue(output, \"Read trimming, read removal, and other QC topics\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort3\")) output = this.addValue(output, \"Creating consensus sequences\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort4\")) output = this.addValue(output, \"Aligning short reads to reference sequence (e.g. BWA)\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort5\")) output = this.addValue(output, \"Variant calling (e.g., GATK, variant filtering, joint calling)\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort6\")) output = this.addValue(output, \"De novo or reference-based genome assembly\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort7\")) output = this.addValue(output, \"BLAST and taxon identification\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort8\")) output = this.addValue(output, \"Annotating variant calls (e.g., identifying ORFs, functional regions)\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort9\")) output = this.addValue(output, \"Phylogeny construction\");\r\n        if (this.RawShortReadAnalysis.includes(\"rawshort10\")) output = this.addValue(output, \"PacBio long read QC, haplotype construction\");\r\n        return output;\r\n    }\r\n\r\n    getStatisticalSequenceAnalysisString(): string {\r\n        let output: string = \"\";\r\n        if (this.StatisticalSequenceAnalysis == undefined) return \"\";\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence1\")) output = this.addValue(output, \"Bulk RNAseq - differential expression (e.g., DESeq, dream, limma-voom)\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence2\")) output = this.addValue(output, \"Bulk RNAseq - mapping & quantification (e.g., RSEM, STAR, HISAT2)\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence3\")) output = this.addValue(output, \"Bulk RNAseq - pseudo-alignment (e.g., Salmon, Kallisto)\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence4\")) output = this.addValue(output, \"Metagenomics - ribosome subunit approaches (e.g., 16S, 18S)\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence5\")) output = this.addValue(output, \"Metagenomics - shotgun sequence approaches\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence6\")) output = this.addValue(output, \"Metagenomics - meta-transcriptomics approaches\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence7\")) output = this.addValue(output, \"Metagenomics - phylogenies & systematics\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence8\")) output = this.addValue(output, \"Statistical modeling - linear/logistic mixed models for genomics analysis\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence9\")) output = this.addValue(output, \"Enrichment testing - gene-based or SNP-based tests (e.g., GSEA, GO)\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence10\")) output = this.addValue(output, \"Phylogenetic analysis - ML approaches\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence11\")) output = this.addValue(output, \"Phylogenetic analysis - Bayesian approaches\");\r\n        if (this.StatisticalSequenceAnalysis.includes(\"statsequence12\")) output = this.addValue(output, \"Phylogenetic analysis - Phylodynamics & phylogeography\");\r\n        return output;\r\n    }\r\n\r\n    getHiddenFilter(): string {\r\n        let output: string = \"\";\r\n        output = this.getTrainingDegreeString() + \" \" + this.getTrainingExperienceString() + \" \" + this.getPathogenFamilyString() + \" \" + this.getOtherPathogensString() + \" \" + this.getStudyTypesString() + \" \" + this.getDataScienceString() + \" \" + this.getContainmentLabString() + \" \" + this.getUsRegulationsString() + \" \" + this.getMinionAnalysisString() + \" \" + this.getStatisticalSequenceAnalysisString() + \" \" + this.getRawShortReadAnalysisString();\r\n        if (this.OtherExpertise != undefined) { output += \" \" + this.OtherExpertise; }\r\n        return output;\r\n    }\r\n\r\n    addValue(output: string, value: string): string {\r\n        if (output.length > 0) { output += \", \"; }\r\n        output += value;\r\n        return output;\r\n    }\r\n\r\n    checkOtherEntries(): void {\r\n        if (this.TrainingDegreesOther != undefined) { if (this.TrainingDegrees == undefined) { this.TrainingDegrees = []; } this.TrainingDegrees.push(\"degreeOther\"); }\r\n        if (this.TrainingExperienceOther != undefined) { if (this.TrainingExperience == undefined) { this.TrainingExperience = []; } this.TrainingExperience.push(\"experienceOther\"); }\r\n        if (this.PathogenFamiliesOther != undefined) { if (this.PathogenFamilies == undefined) { this.PathogenFamilies = []; } this.PathogenFamilies.push(\"pathogenOther\"); }\r\n        if (this.OtherPathogensOther != undefined) { if (this.OtherPathogens == undefined) { this.OtherPathogens = []; } this.OtherPathogens.push(\"otherpathogenOther\"); }\r\n        if (this.AssayDevelopmentOther != undefined) { if (this.AssayDevelopment == undefined) { this.AssayDevelopment = []; } this.AssayDevelopment.push(\"assaydevOther\"); }\r\n    }\r\n}","// extracted by mini-css-extract-plugin","// extracted by mini-css-extract-plugin","//Siema info: https://www.npmjs.com/package/siema\r\n\r\nimport Siema from 'siema';\r\n\r\n\r\n// to account for IE/Edge rounding behaviour https://github.com/pawelgrzybek/siema/issues/244\r\nObject.defineProperty(Siema.prototype, 'buildSliderFrameItem', {\r\n    value: function (elm) {\r\n\r\n        const elementContainer = document.createElement('div');\r\n\r\n        elementContainer.style.cssFloat = this.config.rtl ? 'right' : 'left';\r\n        elementContainer.style.float = this.config.rtl ? 'right' : 'left';\r\n        elementContainer.style.width = `${this.selectorWidth / this.perPage}px`; // fix\r\n\r\n        elementContainer.appendChild(elm);\r\n\r\n        return elementContainer;\r\n    }\r\n});\r\n\r\n\r\n$(document).ready(function () {\r\n    //single carousel\r\n    if ($('.siema.siema-one').length) {\r\n        const carousel = new Siema({\r\n            perPage: 1,\r\n            loop: true\r\n        });\r\n        document.querySelector('.prev').addEventListener('click', () => carousel.prev(1, () => { $('#carouselActiveSlideLabel')?.text(carousel.currentSlide + 1); }));\r\n        document.querySelector('.next').addEventListener('click', () => carousel.next(1, () => { $('#carouselActiveSlideLabel')?.text(carousel.currentSlide + 1); }));\r\n    }\r\n\r\n    //different init for the groups of 3\r\n    //if ($('.siema.siema-three').length) {\r\n    //    const carousel = new Siema({\r\n    //        perPage: 3,\r\n    //        loop: true\r\n    //    });\r\n    //    document.querySelector('.prev').addEventListener('click', () => carousel.prev(3));\r\n    //    document.querySelector('.next').addEventListener('click', () => carousel.next(3));\r\n    //}\r\n});\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n","// extracted by mini-css-extract-plugin","// extracted by mini-css-extract-plugin","// extracted by mini-css-extract-plugin","    \r\n//only import what we use.\r\nimport { library, dom, IconDefinition } from \"@fortawesome/fontawesome-svg-core\";\r\n\r\nimport {\r\n    faBars, faAngleLeft, faAngleRight, faAngleUp, faAngleDown, faTimes, faCaretSquareLeft, faEnvelope,\r\n    faCog, faHome, faUser, faExternalLinkAlt,\r\n    faFolder, faFileExcel, faFileWord, faFilePowerpoint, faFilePdf, faFile, faFileAlt, faFileAudio, faFileVideo, faFileDownload, faQuestionCircle,\r\n    faCopy, faKey, faExclamation, faBullhorn, faFileCode, faFileImage,\r\n    faDatabase, faServer, faCheck, faPlus, faCircleArrowRight, faArrowUpRightFromSquare,\r\n    faVial, faCalendar, faArrowRight, faPlusCircle, faMagnifyingGlass, faSave, faSpinner, faTrash, faExclamationCircle\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\n\r\nimport { faTwitter, faLinkedin} from \"@fortawesome/free-brands-svg-icons\";\r\n\r\nlibrary.add(faBars); library.add(faAngleLeft); library.add(faAngleRight); library.add(faAngleUp); library.add(faAngleDown);\r\nlibrary.add(faTimes); library.add(faCaretSquareLeft); library.add(faEnvelope); library.add(faTwitter); library.add(faCog);\r\nlibrary.add(faHome); library.add(faUser); library.add(faExternalLinkAlt);\r\nlibrary.add(faFolder); library.add(faFileExcel); library.add(faFileWord); library.add(faFilePowerpoint); library.add(faFilePdf);\r\nlibrary.add(faFile); library.add(faFileDownload); library.add(faQuestionCircle); library.add(faCopy); library.add(faKey); library.add(faExclamation);\r\nlibrary.add(faBullhorn); library.add(); library.add(faBullhorn); library.add(faFileAlt); library.add(faFileAudio); library.add(faFileVideo); library.add(faFileCode);\r\nlibrary.add(faVial); library.add(faCalendar); library.add(faArrowRight); library.add(faFileImage); library.add(faMagnifyingGlass); library.add(faPlusCircle);\r\nlibrary.add(faVial); library.add(faCalendar); library.add(faArrowRight); library.add(faFileImage); library.add(faMagnifyingGlass); library.add(faDatabase); library.add(faServer);\r\nlibrary.add(faCheck); library.add(faPlus); library.add(faCircleArrowRight); library.add(faArrowUpRightFromSquare); library.add(faFileImage); library.add(faPlusCircle);\r\nlibrary.add(faSave); library.add(faSpinner); library.add(faTrash); library.add(faExclamationCircle); library.add(faLinkedin);\r\n\r\ndom.watch();","// extracted by mini-css-extract-plugin","// extracted by mini-css-extract-plugin","import { plainToClass } from 'class-transformer';\r\nimport { UserExperience } from \"./expertise.objects\";\r\n\r\n\r\nexport class ExpertisePage {\r\n\r\n    constructor(userData: any) {\r\n        $(() => {\r\n\r\n            let existingExpertise: UserExperience = plainToClass(UserExperience, <UserExperience>userData);\r\n\r\n            //console.log(existingExpertise);\r\n\r\n            existingExpertise.setupUI();\r\n\r\n        });\r\n    }\r\n\r\n    updateExpertise(): void\r\n    {\r\n        let updateData: UserExperience = new UserExperience();\r\n        updateData.initialize();\r\n\r\n        var actionUrl = $(\"#expertise-form\").attr('action');\r\n\r\n        var formData = $(\"#expertise-form\").serializeArray();\r\n        formData.push({ name: \"payload\", value: JSON.stringify(updateData)  });\r\n        //console.log(formData);\r\n\r\n        $.ajax({\r\n            url: actionUrl,\r\n            dataType: 'JSON',\r\n            method: 'POST',\r\n            data: formData,\r\n            success: (data) => {}\r\n        });\r\n\r\n        $(\"html, body\").animate({\r\n            scrollTop: 0\r\n        }, 600);\r\n    }\r\n}","\r\nexport class DocumentTree {\r\n\r\n    constructor(nodes: any, treeId: string = \"jstree\", showPDF: boolean = true) {\r\n\r\n        //console.log(nodes, treeId);\r\n\r\n        treeId = '#' + treeId;\r\n\r\n        $('#docSearch').val('');\r\n        $(treeId).jstree({\r\n            \"plugins\": [\"search\", \"wholerow\"],\r\n            \"search\": {\r\n                \"show_only_matches\": true,\r\n                \"fuzzy\": false\r\n            },\r\n            \"types\": {\r\n                \"folder\": {\r\n                    \"icon\": \"fas fa-folder\"\r\n                },\r\n                \"file\": {\r\n                    \"icon\": \"fas fa-file-alt\"\r\n                }\r\n            },\r\n            'core': {\r\n                'data': nodes\r\n            }\r\n        });//end jstree\r\n\r\n        //open the folder when clicking it (instead of having to target the small arrow)\r\n        $(treeId).on('select_node.jstree', function (e, data) {\r\n            data.instance.toggle_node(data.node);\r\n        });\r\n\r\n        $(treeId).on('changed.jstree', function (e, data) {\r\n            //if selected node is not a directory\r\n            if (data.node.original.type > 0) {\r\n\r\n                if (data.node.original.type == 1 && showPDF) { //PDF\r\n                    var modal = $('#view-document-modal');\r\n                    modal.find('#filename').html(data.node.original.text);\r\n\r\n                    modal.find('#document-iframe').attr('src', data.node.original.link);\r\n\r\n                    //console.log(data.node.original.link);\r\n\r\n                    modal.modal('show');\r\n                }\r\n                else { //just download it\r\n                    var hiddenLink = $('#non-pdf-link');\r\n                    hiddenLink.attr('href', data.node.original.link);\r\n                    hiddenLink.attr('target', '_blank');\r\n                    hiddenLink[0].click();\r\n\r\n                }\r\n\r\n\r\n            }\r\n        });\r\n\r\n\r\n        //do search on keyup\r\n        $('#docSearch').keyup(function () {\r\n            var search = $(this).val();\r\n            $(treeId).jstree('search', search);\r\n        });\r\n\r\n        //handle search clear button\r\n        $('#searchClear').click(function () {\r\n            $('#docSearch').val('');\r\n            $(treeId).jstree('search', '');\r\n        });\r\n\r\n    }\r\n}"],"sourceRoot":""}